Flapjack—graphical genotype visualization

I. Milne; P. Shaw; G. Stephen; M. Bayer; Linda Cardle; W. T. B. Thomas; A. J. Flavell; D. Marshall

doi:10.1093/bioinformatics/btq580

Flapjack—graphical genotype visualization

I. Milne
, P. Shaw
, G. Stephen
, M. Bayer
, Linda Cardle
, W. T. B. Thomas
, A. J. Flavell
, D. Marshall

University of Dundee

Research output: Contribution to journal › Article › peer-review

Abstract

Summary: New software tools for graphical genotyping are required that can routinely handle the large data volumes generated by the high-throughput single-nucleotide polymorphism (SNP) platforms, genotyping-by-sequencing and other comparable genotyping technologies. Flapjack has been developed to facilitate analysis of these data, providing real time rendering with rapid navigation and comparisons between lines, markers and chromosomes, with visualization, sorting and querying based on associated data, such as phenotypes, quantitative trait loci or other mappable features.

Original language	English
Pages (from-to)	3133-3134
Journal	Bioinformatics
Volume	26
Issue number	24
DOIs	https://doi.org/10.1093/bioinformatics/btq580
Publication status	Published - 18 Oct 2010

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https://doi.org/10.1093%2Fbioinformatics%2Fbtq580

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title = "Flapjack—graphical genotype visualization",

abstract = "Summary: New software tools for graphical genotyping are required that can routinely handle the large data volumes generated by the high-throughput single-nucleotide polymorphism (SNP) platforms, genotyping-by-sequencing and other comparable genotyping technologies. Flapjack has been developed to facilitate analysis of these data, providing real time rendering with rapid navigation and comparisons between lines, markers and chromosomes, with visualization, sorting and querying based on associated data, such as phenotypes, quantitative trait loci or other mappable features.",

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AU - Milne, I.

AU - Shaw, P.

AU - Stephen, G.

AU - Bayer, M.

AU - Cardle, Linda

AU - Thomas, W. T. B.

AU - Flavell, A. J.

AU - Marshall, D.

PY - 2010/10/18

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N2 - Summary: New software tools for graphical genotyping are required that can routinely handle the large data volumes generated by the high-throughput single-nucleotide polymorphism (SNP) platforms, genotyping-by-sequencing and other comparable genotyping technologies. Flapjack has been developed to facilitate analysis of these data, providing real time rendering with rapid navigation and comparisons between lines, markers and chromosomes, with visualization, sorting and querying based on associated data, such as phenotypes, quantitative trait loci or other mappable features.

AB - Summary: New software tools for graphical genotyping are required that can routinely handle the large data volumes generated by the high-throughput single-nucleotide polymorphism (SNP) platforms, genotyping-by-sequencing and other comparable genotyping technologies. Flapjack has been developed to facilitate analysis of these data, providing real time rendering with rapid navigation and comparisons between lines, markers and chromosomes, with visualization, sorting and querying based on associated data, such as phenotypes, quantitative trait loci or other mappable features.

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DO - 10.1093/bioinformatics/btq580

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VL - 26

SP - 3133

EP - 3134

JO - Bioinformatics

JF - Bioinformatics

IS - 24

ER -

Flapjack—graphical genotype visualization

Abstract

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