Plant snoRNA database

John W. S. Brown; Manuel Echeverria; Liang-Hu Qu; Todd M. Lowe; Jean-Pierre Bachellerie; Alexander Hüttenhofer; James P. Kastenmayer; Pamela J. Green; Paul Shaw; Dave F. Marshall

doi:10.1093/nar/gkg009

Plant snoRNA database

John W. S. Brown
, Manuel Echeverria
, Liang-Hu Qu
, Todd M. Lowe
, Jean-Pierre Bachellerie
, Alexander Hüttenhofer
, James P. Kastenmayer
, Pamela J. Green
, Paul Shaw
, Dave F. Marshall

Information & Computational Sciences

Université de Perpignan
Sun Yat-Sen University
University of California at Santa Cruz
Université Paul Sabatier Toulouse III
University of Münster
Michigan State University
University of Delaware

Research output: Contribution to journal › Article › peer-review

Abstract

The Plant snoRNA database ( http://www.scri.sari.ac.uk/plantsnoRNA/ ) provides information on small nucleolar RNAs from Arabidopsis and eighteen other plant species. Information includes sequences, expression data, methylation and pseudouridylation target modification sites, initial gene organization (polycistronic, single gene and intronic) and the number of gene variants. The Arabidopsis information is divided into box C/D and box H/ACA snoRNAs, and within each of these groups, by target sites in rRNA, snRNA or unknown. Alignments of orthologous genes and gene variants from different plant species are available for many snoRNA genes. Plant snoRNA genes have been given a standard nomenclature, designed wherever possible, to provide a consistent identity with yeast and human orthologues.

Original language	English
Pages (from-to)	432-435
Journal	Nucleic Acids Research
Volume	31
Issue number	1
DOIs	https://doi.org/10.1093/nar/gkg009
Publication status	Published - 1 Jan 2003

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title = "Plant snoRNA database",

abstract = "The Plant snoRNA database ( http://www.scri.sari.ac.uk/plantsnoRNA/ ) provides information on small nucleolar RNAs from Arabidopsis and eighteen other plant species. Information includes sequences, expression data, methylation and pseudouridylation target modification sites, initial gene organization (polycistronic, single gene and intronic) and the number of gene variants. The Arabidopsis information is divided into box C/D and box H/ACA snoRNAs, and within each of these groups, by target sites in rRNA, snRNA or unknown. Alignments of orthologous genes and gene variants from different plant species are available for many snoRNA genes. Plant snoRNA genes have been given a standard nomenclature, designed wherever possible, to provide a consistent identity with yeast and human orthologues.",

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AU - Brown, John W. S.

AU - Echeverria, Manuel

AU - Qu, Liang-Hu

AU - Lowe, Todd M.

AU - Bachellerie, Jean-Pierre

AU - Hüttenhofer, Alexander

AU - Kastenmayer, James P.

AU - Green, Pamela J.

AU - Shaw, Paul

AU - Marshall, Dave F.

PY - 2003/1/1

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AB - The Plant snoRNA database ( http://www.scri.sari.ac.uk/plantsnoRNA/ ) provides information on small nucleolar RNAs from Arabidopsis and eighteen other plant species. Information includes sequences, expression data, methylation and pseudouridylation target modification sites, initial gene organization (polycistronic, single gene and intronic) and the number of gene variants. The Arabidopsis information is divided into box C/D and box H/ACA snoRNAs, and within each of these groups, by target sites in rRNA, snRNA or unknown. Alignments of orthologous genes and gene variants from different plant species are available for many snoRNA genes. Plant snoRNA genes have been given a standard nomenclature, designed wherever possible, to provide a consistent identity with yeast and human orthologues.

U2 - 10.1093/nar/gkg009

DO - 10.1093/nar/gkg009

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VL - 31

SP - 432

EP - 435

JO - Nucleic Acids Research

JF - Nucleic Acids Research

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Plant snoRNA database

Abstract

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